Current UNIX Software

The following categories contain the most common UNIX software used in CSE Labs. Visit this help page to learn how to load modules. Check the list of all available UNIX software modules by running module avail. Email csehelp@umn.edu to request software or a different version of existing software.

Bioinformatics

  • Cytoscape
    • Module: java/cytoscape
  • Jmol
    • Already installed: jmol
  • QIIME
    • Module: soft/qiime
  • Scaffold
    • Module: soft/scaffold

Databases

  • MongoDB
    • Module: soft/mongodb
  • Oracle
    • Module: soft/oracle
  • Mysql
    • Already installed: mysql
  • Mysql-workench
    • Already installed: mysql-workbench

EDA/ECAD

  • GTKWave
    • Already installed: gtkwave
  • Icarus Verilog
    • Already installed: iverilog

Editors/IDE

  • Bluefish
    • Already installed: bluefish
  • Code::Blocks
    • Already installed: codeblocks
  • Eclipse
    • Module: java/eclipse
  • Emacs
    • Already installed: emacs
  • Geany
    • Module: soft/geany
  • gedit
    • Already installed: gedit
  • KDevelop
    • Already installed: kdevelop
  • nano
    • Already installed: nano
  • NetBeans
    • Module: java
  • vi
    • Already installed: vi

Email

  • Alpine
    • Already installed: pine
  • Thunderbird
    • Already installed: thunderbird

File Synchronization

  • Unison
    • Module: soft/unison

Graphics

  • Blender
    • Module: soft/blender
  • GIMP
    • Already installed: gimp
  • Inkscape
    • Already installed: inkscape
  • Ipe
    • Already installed: ipe

Math

  • MATLAB with dozens of toolboxes
    • Already installed: matlab
  • Mathematica
    • Already installed: math
  • Octave
    • Already Installed: octave
  • Qhull
    • Already installed: qhull

Office Software

  • Gnumeric
    • Already installed: gnumeric
  • Libre Office
    • Already installed: libreoffice
  • Scribus
    • Already installed: scribus

PDF Readers

  • Adobe Reader
    • Already installed: acroread
  • Evince
    • Already installed: evince
  • xpdf
    • Already installed: xpdf

Languages

  • C, C++ (Clang)
    • Module: soft/llvm+clang
  • C, C++ and Fortran (GCC)
    • Already installed: gcc
  • Free Pascal
    • Already installed: fpc
  • Go
    • Module: soft/go
  • Guile
    • Already installed: guile
  • Haskell
    • Module: soft/haskell
  • OCaml
    • Module: soft/ocaml
  • PHP
    • Already installed: php
  • Processing
    • Module: soft/processing
  • Python with dozens of modules
    • Module: soft/python
  • Python Anaconda
    • Module: soft/python/anaconda
  • R
    • Module: soft/r
  • Racket
    • Module: scheme/racket
  • Ruby
    • Already installed: ruby
  • SML/NJ
    • Already installed: sml
  • Perl
    • Already installed: perl
  • Prolog
    • module: prolog
  • Mit-gnu
    • Module: scheme/mit-gnu
  • Racket
    • Module: scheme/racket
  • Nodejs
    • Module: soft/nodejs
  • SM
    • Module: soft/sm
  • Tamarin-prover
    • Module: soft/tamarin-prover

Tools

  • Performance Application Programming Interface (PAPI)
    • Module: soft/papi
  • SWIG
    • Already installed: swig
  • Valgrind
    • Already installed: valgrind
  • Hpc/pvm
    • Module: hpc/pvm3.4
  • CMAKE
    • Module: soft/cmake
  • GMSH
    • Module: soft/gmsh
  • Gurobi
    • Module: soft/gurobi
  • Metaphlan
    • Module: soft/metaphlan
  • Multi2sim
    • Module: soft/multi2sim
  • NS2
    • Module: soft/ns2

Remote Connection Clients

  • Rdesktop
    • Already installed: rdesktop
  • Remmina
    • Already installed: remmina

Revision Control

  • CVS
    • Already installed: cvs
  • Git
    • Already installed: git
  • RCS
    • Already installed: rcs

Robotics

  • ROS
    • Module: soft/ros

Software Development Kits

  • Android SDK
    • Module: soft/android
  • CUDA
    • Installed on cuda01.cselabs.umn.edu through cuda08.cselabs.umn.edu in /usr/local/cuda
  • GPU Ocelot
    • Module: soft/gpuocelot
  • Arduino
    • Module: soft/arduino

TeX

  • Kile
    • Already installed: kile
  • TeX Live
    • Module: tex/texlive

Visualization/Computer Vision

  • OpenCV
    • Module: soft/opencv
  • Visit
    • Module: soft/visit

Web Browsers

  • Chrome
    • Already installed: chrome
  • Firefox
    • Already installed: firefox
  • Lynx
    • Already installed: lynx